Get Started: Methods to address batch effects8 months ago
Installation | Set up and plot example data | Add batch effects | Perform batch effect adjustment without confounders | Simple means | Means from marginal standardization | Inverse-probability weighting | Quantile regression | Quantile normalization | Perform batch effect adjustment in the presence of confounding | Set up example data with confounding present | For comparison: Batch effect adjustment ignoring confounding | Additional features | Missing values | Model diagnostics