{ "_id": "6a1696f7acfb0bcc41d7c007", "Package": "risks", "Title": "Estimate Risk Ratios and Risk Differences using Regression", "Version": "0.4.3", "Authors@R": "c(person(given = \"Konrad\",\nfamily = \"Stopsack\",\nrole = c(\"aut\", \"cre\", \"cph\"),\nemail = \"stopsack@post.harvard.edu\",\ncomment = c(ORCID = \"0000-0002-0722-1311\")),\nperson(given = \"Travis\",\nfamily = \"Gerke\",\nrole = c(\"aut\"),\nemail = \"tgerke@mail.harvard.edu\",\ncomment = c(ORCID = \"0000-0002-9500-8907\")))", "Description": "Risk ratios and risk differences are estimated using\nregression models that allow for binary, categorical, and\ncontinuous exposures and confounders. Implemented are marginal\nstandardization after fitting logistic models (g-computation)\nwith delta-method and bootstrap standard errors, Miettinen's\ncase-duplication approach (Schouten et al. 1993,\n), log-binomial (Poisson) models\nwith empirical variance (Zou 2004, ),\nbinomial models with starting values from Poisson models\n(Spiegelman and Hertzmark 2005, ), and\nothers.", "License": "GPL-3", "Encoding": "UTF-8", "LazyData": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "URL": "https://stopsack.github.io/risks/", "BugReports": "https://github.com/stopsack/risks/issues", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://stopsack.r-universe.dev", "Date/Publication": "2025-06-01 14:33:18 UTC", "RemoteUrl": "https://github.com/stopsack/risks", "RemoteRef": "HEAD", "RemoteSha": "54b5f463fd1e7dbcb545f6f5ed5e23a4b8f70af2", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-27 06:56:30 UTC", "User": "root" }, "Author": "Konrad Stopsack [aut, cre, cph] (ORCID:\n),\nTravis Gerke [aut] (ORCID: )", "Maintainer": "Konrad Stopsack ", "MD5sum": "083afbba68faf64c73365bbc9031de93", "_user": "stopsack", "_type": "src", "_file": "risks_0.4.3.tar.gz", "_fileid": "2c25eb932389fcf378e0c1f6caee322e4fb34e7fc57314e9fd7591dae64e21ce", "_filesize": 4632159, "_sha256": "2c25eb932389fcf378e0c1f6caee322e4fb34e7fc57314e9fd7591dae64e21ce", "_created": "2026-05-27T06:56:30.000Z", "_published": "2026-05-27T07:02:15.595Z", "_distro": "noble", "_jobs": [ { "job": 78024000692, "time": 200, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7233904085" }, { "job": 78024000685, "time": 198, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7233903265" }, { "job": 78024000689, "time": 173, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7233922244" }, { "job": 78024000684, "time": 152, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7233911599" }, { "job": 78023393175, "time": 279, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7233848300" }, { "job": 78024000681, "time": 119, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7233881895" }, { "job": 78024000748, "time": 173, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7233897208" }, { "job": 78024000735, "time": 202, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7233906237" }, { "job": 78024000703, "time": 148, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7233889792" } ], "_buildurl": "https://github.com/r-universe/stopsack/actions/runs/26495720672", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/stopsack/risks", "_commit": { "id": "54b5f463fd1e7dbcb545f6f5ed5e23a4b8f70af2", "author": "Konrad H. Stopsack <35557324+stopsack@users.noreply.github.com>", "committer": "Konrad H. Stopsack <35557324+stopsack@users.noreply.github.com>", "message": "fulfill CRAN requirements for v0.4.3\n", "time": 1748788398 }, "_maintainer": { "name": "Konrad Stopsack", "email": "stopsack@post.harvard.edu", "orcid": "0000-0002-0722-1311" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "boot", "role": "Imports" }, { "package": "bcaboot", "role": "Imports" }, { "package": "broom", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "purrr", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "sandwich", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "addreg", "role": "Suggests" }, { "package": "covr", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "logbin", "role": "Suggests" }, { "package": "MASS", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "stopsack", "_selfowned": true, "_usedby": 2, "_updates": [ { "week": "2025-22", "n": 1 } ], "_tags": [], "_topics": [ "binomial", "biostatistics", "epidemiology", "regression-models" ], "_stars": 8, "_contributors": [ { "user": "stopsack", "count": 90, "uuid": 35557324 }, { "user": "tgerke", "count": 46, "uuid": 3831928 } ], "_userbio": { "uuid": 35557324, "type": "user", "name": "Konrad H. Stopsack", "description": "Epidemiologist" }, "_downloads": { "count": 745, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/risks" }, "_devurl": "https://github.com/stopsack/risks", "_pkgdown": "https://stopsack.github.io/risks/", "_searchresults": 13, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/readme.html", "extra/readme.md", "extra/risks.html", "manual.pdf" ], "_homeurl": "https://github.com/stopsack/risks", "_realowner": "stopsack", "_cranurl": true, "_releases": [ { "version": "0.4.2", "date": "2023-06-13" }, { "version": "0.4.3", "date": "2025-05-30" } ], "_exports": [ "conv.test", "riskdiff", "riskratio", "rr_rd_mantel_haenszel" ], "_datasets": [ { "name": "breastcancer", "title": "Breast Cancer Data", "object": "breastcancer", "class": [ "tbl_df", "tbl", "data.frame" ], "fields": [ "death", "stage", "receptor" ], "rows": 192, "table": true, "tojson": true } ], "_help": [ { "page": "breastcancer", "title": "Breast Cancer Data", "topics": [ "breastcancer" ] }, { "page": "confint.risks", "title": "Confidence Intervals for Model Parameters", "topics": [ "confint.risks" ] }, { "page": "is.risks", "title": "Check Risks Class", "topics": [ "is.risks" ] }, { "page": "print.risks", "title": "Print model", "topics": [ "print.risks" ] }, { "page": "print.summary.risks", "title": "Print model summary", "topics": [ "print.summary.risks" ] }, { "page": "riskratio", "title": "Fit risk ratio and risk difference models", "topics": [ "riskdiff", "riskratio" ] }, { "page": "risks", "title": "risks: Estimate risk ratios and risk differences using regression", "topics": [ "risks-package", "risks" ] }, { "page": "rr_rd_mantel_haenszel", "title": "Risk Ratios and Risk Differences from Mantel-Haenszel Estimators", "topics": [ "rr_rd_mantel_haenszel" ] }, { "page": "summary.duplicate", "title": "Summary for logistic model with case duplication and cluster-robust covariance", "topics": [ "summary.duplicate" ] }, { "page": "summary.margstd_boot", "title": "Summary for models using marginal standardization", "topics": [ "summary.margstd_boot" ] }, { "page": "summary.margstd_delta", "title": "Summary for models using marginal standardization with delta method SEs", "topics": [ "summary.margstd_delta" ] }, { "page": "summary.risks", "title": "Generate model summary", "topics": [ "summary.risks" ] }, { "page": "summary.robpoisson", "title": "Summary for Poisson model with robust covariance", "topics": [ "summary.robpoisson" ] }, { "page": "tidy.risks", "title": "Tidy model summaries for risks models", "topics": [ "tidy.risks" ] } ], "_pkglogo": "https://github.com/stopsack/risks/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/stopsack/risks/raw/HEAD/README.md", "_rundeps": [ "backports", "bcaboot", "boot", "broom", "cli", "cpp11", "dplyr", "generics", "glue", "lattice", "lifecycle", "magrittr", "pillar", "pkgconfig", "purrr", "R6", "rlang", "sandwich", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr", "zoo" ], "_vignettes": [ { "source": "risks.Rmd", "filename": "risks.html", "title": "Introduction to the risks package: Get Started", "engine": "knitr::rmarkdown", "headings": [ "Installation", "An example cohort study", "Adjusted risk ratios", "Adjusted risk differences", "Accessing model coefficients", "More post-estimation commands" ], "created": "2021-02-19 13:35:24", "modified": "2025-03-20 15:07:20", "commits": 5 }, { "source": "margstd.Rmd", "filename": "margstd.html", "title": "Marginal standardization", "engine": "knitr::rmarkdown", "headings": [ "The basics", "Choice of exposure variable", "Bootstrap confidence intervals", "Bootstrap repeats" ], "created": "2021-02-19 13:35:24", "modified": "2023-06-13 12:58:24", "commits": 6 }, { "source": "models.Rmd", "filename": "models.html", "title": "Models and model comparisons", "engine": "knitr::rmarkdown", "headings": [ "Implemented model types", "Model choice", "Model comparisons" ], "created": "2021-02-19 13:35:24", "modified": "2024-04-16 20:39:54", "commits": 7 } ], "_score": 5.971275848738105, "_indexed": true, "_nocasepkg": "risks", "_universes": [ "stopsack" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.4.3", "date": "2026-05-27T06:58:50.000Z", "distro": "noble", "commit": "54b5f463fd1e7dbcb545f6f5ed5e23a4b8f70af2", "fileid": "d54041c9fa0a756b8b03cc1a30c1f8f7937cb7e945f4554ef39b484b88e33919", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/stopsack/actions/runs/26495720672" }, { "r": "4.6.0", "os": "linux", "version": "0.4.3", "date": "2026-05-27T06:58:49.000Z", "distro": "noble", "commit": "54b5f463fd1e7dbcb545f6f5ed5e23a4b8f70af2", "fileid": "19d61da8a680c2aae8406f38a8e66717801fb9da9ac48cd45ca095a94166ec5c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/stopsack/actions/runs/26495720672" }, { "r": "4.5.3", "os": "mac", "version": "0.4.3", "date": "2026-05-27T07:00:33.000Z", "commit": "54b5f463fd1e7dbcb545f6f5ed5e23a4b8f70af2", "fileid": "3dd84efc94944cfdbb9500bae72ef7c82af259bb41e76b25a445e9103b543ab0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/stopsack/actions/runs/26495720672" }, { "r": "4.6.0", "os": "mac", "version": "0.4.3", "date": "2026-05-27T06:59:53.000Z", "commit": "54b5f463fd1e7dbcb545f6f5ed5e23a4b8f70af2", "fileid": "d5354e018d66e776209d748c65726315de3572b7fe06a3d3d4e262751af76c5d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/stopsack/actions/runs/26495720672" }, { "r": "4.6.0", "os": "wasm", "version": "0.4.3", "date": "2026-05-27T06:58:49.000Z", "commit": "54b5f463fd1e7dbcb545f6f5ed5e23a4b8f70af2", "fileid": "18b05aa35823ede055324454edbc79a99f4ad0eb723b77ad560937c45c0bd31a", "status": "success", "buildurl": "https://github.com/r-universe/stopsack/actions/runs/26495720672" }, { "r": "4.7.0", "os": "win", "version": "0.4.3", "date": "2026-05-27T06:58:05.000Z", "commit": "54b5f463fd1e7dbcb545f6f5ed5e23a4b8f70af2", "fileid": "c4e00176977c35b41df655a04eae2b19fb266edff06e928e83904b2e4155fa2e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/stopsack/actions/runs/26495720672" }, { "r": "4.5.3", "os": "win", "version": "0.4.3", "date": "2026-05-27T06:58:36.000Z", "commit": "54b5f463fd1e7dbcb545f6f5ed5e23a4b8f70af2", "fileid": "97f630f44cd044b399998d81f4a3be09a587e13e7b069a29937631d061dda6a8", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/stopsack/actions/runs/26495720672" }, { "r": "4.6.0", "os": "win", "version": "0.4.3", "date": "2026-05-27T06:57:45.000Z", "commit": "54b5f463fd1e7dbcb545f6f5ed5e23a4b8f70af2", "fileid": "cc669bd1ab6f4a66e499b129afed376effa17616b0a0da36bd54505342f8729a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/stopsack/actions/runs/26495720672" } ] }